A combustor assembly alignment system comprises an alignment plate comprising a plurality of alignment plate holes that align with a plurality of combustor assembly flange holes, an alignment plate securement system configured to secure the alignment plate to a combustor assembly flange by passing through a first alignment plate hole of the alignment plate and a first combustor assembly flange hole of the combustor assembly flange, and an alignment tube that extends away from the alignment plate, wherein a hollow interior of the alignment tube aligns with a second combustor assembly flange hole when the alignment plate is secured to the combustor assembly flange.