A programmable battery protection system. Implementations may include: a battery, only two field effect transistors (FETs), and a battery protection integrated circuit (IC). The battery protection IC may include an array of fuses, first plurality of latches, second plurality of latches, and a comparator. The array of fuses, first plurality of latches, and second plurality of latches may be coupled with a fuse refresh circuit coupled with an analog trigger circuit and a logic trigger circuit. The fuse refresh circuit may be configured to refresh the states of the latches using states of the array of fuses in response to receiving an operating trigger signal generated by the analog trigger circuit or a logic trigger signal generated by the logic trigger circuit. The first plurality of latches may be used to generate a threshold voltage that is provided to the comparator.