Systems and methods for authorizing drones with access to airborne fulfillment centers (AFCs) and other warehouse facilities are described. For example, the systems and methods perform multiple authentication processes, including a physical authentication process and a virtual or electronic authentication process, when determining whether a drone is authorized to access an AFC. Once authorized, the drone may access the AFC to pick up and/or deliver packages or other products, to recharge, to seek repairs, to be housed, and so on.