A container storage facility includes a storage rack that has a plurality of storage sections as a storage section group, a gas supply device for supplying a cleaning gas to the storage sections via a branch-type supply pipe, a transport apparatus for transporting containers to the storage sections, and a control unit for controlling operation of the transport apparatus. When a container is first stored in a storage section included in the storage section group, the control unit controls operations of the transport apparatus so as to transport the container to a storage section to which the cleaning gas is supplied from an end area of the supply pipe.