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US Patent 11853396 Inter-cluster intensity variation correction and base calling

Patent 11853396 was granted and assigned to Illumina on December, 2023 by the United States Patent and Trademark Office.

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Contents

Is a
Patent
Patent
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Patent attributes

Patent Applicant
Illumina
Illumina
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Current Assignee
Illumina
Illumina
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Patent Jurisdiction
United States Patent and Trademark Office
United States Patent and Trademark Office
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Patent Number
118533960
Patent Inventor Names
Gavin Derek Parnaby0
Nitin Udpa0
Rami Mehio0
Eric Jon Ojard0
John S Vieceli0
Abde Ali Hunaid Kagalwalla0
Date of Patent
December 26, 2023
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Patent Application Number
181546030
Date Filed
January 13, 2023
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Patent Citations
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US Patent 11188778 Equalization-based image processing and spatial crosstalk attenuator
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US Patent 6865301 Reducing aliasing artifacts when shaping a digital image
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US Patent 10068053 Basecaller for DNA sequencing using machine learning
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US Patent 11361194 Systems and methods for per-cluster intensity correction and base calling
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Patent Primary Examiner
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Quan M Hua
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CPC Code
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G06V 10/751
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G06V 20/47
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G06V 20/69
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G06V 2201/03
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G06V 10/28
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G06V 10/30
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G06V 10/42
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G06V 10/44
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Patent abstract

The technology disclosed corrects inter-cluster intensity profile variation for improved base calling on a cluster-by-cluster basis. The technology disclosed accesses current intensity data and historic intensity data of a target cluster, where the current intensity data is for a current sequencing cycle and the historic intensity data is for one or more preceding sequencing cycles. A first accumulated intensity correction parameter is determined by accumulating distribution intensities measured for the target cluster at the current and preceding sequencing cycles. A second accumulated intensity correction parameter is determined by accumulating intensity errors measured for the target cluster at the current and preceding sequencing cycles. Based on the first and second accumulated intensity correction parameters, next intensity data for a next sequencing cycle is corrected to generate corrected next intensity data, which is used to base call the target cluster at the next sequencing cycle.

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