A computer implemented method, apparatus, and computer usable program code for a three dimensional presentation of defects in a system. In response to a request to present a set of defects using a three dimensional presentation, information is retrieved for the set of defects from a database, wherein the information includes an identification of a defect and a location of the defect in the system. A three dimensional model of the system is retrieved in which the defects are located. The defects are placed in the three dimensional model of the system to generate a modified three dimensional model. The modified three dimensional model is presented on a graphical user interface.