An exhaust gas capture system for capturing the exhaust gas emitted by auxiliary engines, auxiliary boilers, and other sources on an Ocean Going Vessel (OGV) while at berth or at anchor so that these gases may be carried to an emissions treatment system for removal of air pollutants and or greenhouse gases. The exhaust gas capture system includes a manifold and a family of parallel-flow flexible ducts for connecting directly to individual OGV exhaust pipes. The exhaust gas capture system further includes apparatus for connecting the parallel-flow flexible ducts to the OGV exhaust pipes.