Academic papers in genomics | 3,070 results

Name	Publication URL	DOI	Academic Discipline	Author Names
‌ Homozygous GRN mutations: unexpected phenotypes and new insights into pathological and molecular mechanisms	arxiv.org/pdf/2011.10319.pdf	doi.org/10.48550/arXiv.2011.10319	Genomics Biomolecule ‌ Quantitative biology	Agnès CamuzatAlexandra DurrAlexis BriceAntoinette GelotArmand BottaniBenoît RuchetonCatherine CaillaudCharles DuyckaertsDario SaracinoFabienne ClotFoudil LamariFrédérique FluchèreIsabelle Le BerJohannes LobrinusLaureen ChatLudmila JornéaMathieu BarbierPeter MyersStéphane AuvinSylvie ForlaniVincent Huin
‌ Transcriptome Complexities Across Eukaryotes	arxiv.org/pdf/2211.02546.pdf	doi.org/10.48550/arXiv.2211.02546	Genomics ‌ Quantitative biology	Adalena V. NanniJames E. Titus-McQuillanLauren M. McIntyreRebekah L. Rogers
‌ RUBICON: A Framework for Designing Efficient Deep Learning-Based Genomic Basecallers	arxiv.org/pdf/2211.03079.pdf	doi.org/10.48550/arXiv.2211.03079	Computer science Genomics Hardware architecture ‌ Quantitative biology	Alireza KhodamoradiCan FirtinaGagandeep SinghHenk CorporaalKristof DenolfMeryem Banu CavlakMohammed AlserOnur Mutlu
‌ Embed-Search-Align: DNA Sequence Alignment using Transformer Models	arxiv.org/pdf/2309.11087.pdf	doi.org/10.48550/arXiv.2309.11087	Artificial Intelligence (AI) Computer science Genomics ‌ Quantitative biology	K. C. EnevoldsenLajoyce MboningLouis-S. BouchardMatteo PellegriniPavan HolurThalia GeorgiouVwani Roychowdhury
‌ A Multimodal Graph Neural Network Framework of Cancer Molecular Subtype Classification	arxiv.org/pdf/2302.12838.pdf	doi.org/10.48550/arXiv.2302.12838	Machine learning Computer science Genomics ‌ Quantitative biology	Bingjun LiSheida Nabavi
‌ A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater	arxiv.org/pdf/2309.16994.pdf	doi.org/10.48550/arXiv.2309.16994	Genomics ‌ Quantitative biology	Alex ZelikovskyJustin Maine SuKhooshbu Kantibhai PatelMaryna KitNicolae DrabcinskiOksana ZlenkoPooja JaiswalSerghei MangulVictor GordeevViorel MunteanuYidian Xu
‌ Transcriptomic and metabolomic analysis of copper stress acclimation in Ectocarpus siliculosus highlights signaling and tolerance mechanisms in brown algae	arxiv.org/pdf/1502.02001.pdf	doi.org/10.48550/arXiv.1502.02001	Genomics ‌ Quantitative biology	Andrés RitterCatherine BoyenJuan A CorreaLBI2MPhilippe PotinSBRSimon M DittamiSophie GoulitquerThierry TononUMR7139
‌ The MAPT gene is differentially methylated in the progressive supranuclear palsy brain	arxiv.org/pdf/2011.10447.pdf	doi.org/10.48550/arXiv.2011.10447	Genomics ‌ Quantitative biology	Bernard SablonnièreCharles DuyckaertsClaire-Marie DhaenensClaude-Alain MaurageDominique Caparros-LefebvreEniko KovariFlorence PasquierHélène BehalJPArcJulien LabreucheLuc BuéeValérie Buée-ScherrerVincent DeramecourtVincent Huin
‌ Large-scale Machine Learning for Metagenomics Sequence Classification	arxiv.org/pdf/1505.06915.pdf	doi.org/10.48550/arXiv.1505.06915	Machine learning Computer science Statistics Genomics ‌ Quantitative biology	CBIOJean-Baptiste VeyrierasJean-Philippe VertKévin VervierMaud TournoudPierre Mahé
‌ An updated State-of-the-Art Overview of transcriptomic Deconvolution Methods	arxiv.org/pdf/2310.14722.pdf	doi.org/10.48550/arXiv.2310.14722	Genomics ‌ Quantitative biology	Bastien ChassagnolEtienne BechtGrégory NuelLPSM
‌ Swordfish: A Framework for Evaluating Deep Neural Network-based Basecalling using Computation-In-Memory with Non-Ideal Memristors	arxiv.org/pdf/2310.04366.pdf	doi.org/10.48550/arXiv.2310.04366	Computer science Genomics Hardware architecture ‌ Emerging technologies ‌ Quantitative biology	Can FirtinaGagandeep SinghHaiyu MaoJoel LindeggerMahdi ZahediOnur MutluSaid HamdiouiStephan WongTaha Shahroodi
‌ Markov Logic Networks in the Analysis of Genetic Data	arxiv.org/pdf/1003.0902.pdf	doi.org/10.48550/arXiv.1003.0902	Genomics ‌ Quantitative biology	David J. GalasNikita A. Sakhanenko
‌ MetaCache-GPU: Ultra-Fast Metagenomic Classification	arxiv.org/pdf/2106.08150.pdf	doi.org/10.48550/arXiv.2106.08150	Computer science Genomics ‌ Quantitative biology	André MüllerBertil SchmidtChristian HundtDaniel JüngerJohannes Gutenberg University Mainz, GermanyNVIDIA AI Technology Center LuxembourgRobin Kobus
‌ Evolutionary genomics of transposable elements in Saccharomyces cerevisiae	arxiv.org/pdf/1209.0128.pdf	doi.org/10.48550/arXiv.1209.0128	Genomics ‌ Quantitative biology	Casey M. BergmanDouda BensassonMartin Carr
‌ Discovering functional DNA elements using population genomic information: A proof of concept using human mtDNA	arxiv.org/pdf/1402.1781.pdf	doi.org/10.48550/arXiv.1402.1781	Genomics ‌ Quantitative biology	Andrew D. KernDaniel R. Schrider
‌ MIK2 is a candidate gene of the S-locus for sporophytic self-incompatibility (SSI) in chicory (Cichorium intybus, Asteraceae)	arxiv.org/pdf/2304.06410.pdf	doi.org/10.48550/arXiv.2304.06410	Genomics ‌ Quantitative biology	Alessandro VannozziFabio PalumboFrancesco ScarioloGabriele MagonGianni BarcacciaGiovanni GabelliMargherita LucchinSamela DragaSilvia Farinati
‌ Detection of selective sweeps in cattle using genome-wide SNP data	arxiv.org/pdf/1212.2300.pdf	doi.org/10.48550/arXiv.1212.2300	Genomics ‌ Quantitative biology	Holly R. RameyJared E. DeckerJeremy F. TaylorMegan M. RolfRobert D. SchnabelStephanie D. McKay
‌ Construction and Functional Analysis of Human Genetic Interaction Networks with Genome-wide Association Data	arxiv.org/pdf/1101.3343.pdf	doi.org/10.48550/arXiv.1101.3343	Genomics ‌ Quantitative biology	Benjamin OatelyBrian Van NessChad L. MyersGang FangMajda HaznadarMichael SteinbachVanja PaunicVipin KumarWen Wang
‌ Characterizing Discriminative Patterns	arxiv.org/pdf/1102.4104.pdf	doi.org/10.48550/arXiv.1102.4104	Computer science Database Information theory Genomics ‌ Quantitative biology	Benjamin OatleyBrian Van NessGang FangMichael SteinbachVipin KumarWen Wang
‌ An evaluation of DNA-damage response and cell-cycle pathways for breast cancer classification	arxiv.org/pdf/1505.04846.pdf	doi.org/10.48550/arXiv.1505.04846	Genomics ‌ Quantitative biology	Atefeh Taherian FardMark A. RaganSriganesh Srihari
‌ pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree	arxiv.org/pdf/1003.5943.pdf	doi.org/10.48550/arXiv.1003.5943	Genomics ‌ Quantitative biology	E Virginia ArmbrustFrederick A MatsenRobin B Kodner
‌ Gene Transformer: Transformers for the Gene Expression-based Classification of Lung Cancer Subtypes	arxiv.org/pdf/2108.11833.pdf	doi.org/10.48550/arXiv.2108.11833	Artificial Intelligence (AI) Computer science Genomics ‌ Quantitative biology	Anwar KhanBoreom Lee
‌ Analysis of evolutionary origins of genomic loci harboring 59,732 candidate human-specific regulatory sequences identifies genetic divergence patterns during evolution of Great Apes	arxiv.org/pdf/1810.01062.pdf	doi.org/10.48550/arXiv.1810.01062	Genomics ‌ Quantitative biology	Gennadi Glinsky
‌ Preventing common hereditary disorders through time-separated twinning	arxiv.org/pdf/1301.4299.pdf	doi.org/10.48550/arXiv.1301.4299	Genomics ‌ Quantitative biology	Alexander ChurbanovLevon Abrahamyan
‌ The complex hybrid origins of the root knot nematodes revealed through comparative genomics	arxiv.org/pdf/1306.6163.pdf	doi.org/10.48550/arXiv.1306.6163	Genomics ‌ Quantitative biology	David H LuntGeorgios KoutsovoulosMark L BlaxterSujai Kumar

Agnès CamuzatAlexandra DurrAlexis BriceAntoinette GelotArmand BottaniBenoît RuchetonCatherine CaillaudCharles DuyckaertsDario SaracinoFabienne ClotFoudil LamariFrédérique FluchèreIsabelle Le BerJohannes LobrinusLaureen ChatLudmila JornéaMathieu BarbierPeter MyersStéphane AuvinSylvie ForlaniVincent Huin